We have a model MG509 Twindisk transmission in our boat. When we purchased it, the oil sample came back abnormally high for lead and copper, just like yours. We changed the oil, ran for about two hours and resampled. Still high, but much less.
I spoke to the Twindisk rep in Seattle, gave him the information, and his first questions were, "When was the oil last changed?", and "What is the material of the Transmission OIl Cooler?"
He stated that the MG509 (not sure about yours) contains no copper/lead bushings or bearings, and that if it were the friction plate was wearing, you would also have high levels of another metal, don't quote me on this, but I believe it was zinc.
Turns out the transmission oil was well, WELL overdue for changing.
Also, our transmission oil coolers are copper, soldiered together (lead).
His professional opinion was that the oil cooler was leaching copper and lead into the oil. Change oil again in a year, and resample, but he didn't feel it was an issue at all.
Now my personal opinion:
You did the fluid samples for a reason. Unless you got just a screaming deal on the boat, I would try and get the cost of a rebuild, and replacement transmission oil coolers deducted off the price, or at least split the difference with the seller. I believe you have more than enough grounds for that request.