Kevin,
I'm sort of in the same situation as you. Have 2 vacuflush systems that are 13 years old with little or no preventive maintenance and lesser quality poop hose. Decided to replace all the hose which cost a little over $300 for a roll of Tridents best. The rebuild kits for the 2 pumps was around $128 per pump for valves, new bellows, and o-rings.
Ran 50 gallons of water through each system and a little bleach in the water at the very end. With the fill water turned off, I ran each head dry for a few minutes. When I disassembled each system there was maybe a gallon of water to catch. Smell wasn't significant. Figure I will stock the parts for one toilet and service them as needed. Dealing with a pump problem was my biggest fear if the line was full of poop. If you throughly flush the system, it's really not bad to work on. Will probably repeat the process to change the valves every 2 years. Will likely stock a spare set (4) of valves and maybe 1 pump motor.
One modification I did to my system was to install a 1/4 turn PVC ball valve just after my pump so that I won't have to drain the lines going from the pump to the holding tank. In fact, I can't imagine why you wouldn't want that valve just after any head pump. Lot less mess potential when fixing a broken pump.
Ted